JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
DNAH3_chr16_20928111_21155846	0/0	c0078	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0079	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0080	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0081	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0082	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0083	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0084	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0085	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0086	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0087	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0088	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0089	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0090	12213	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0091	12213	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0092	12213	1	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0093	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0094	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0095	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0096	12213	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0097	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0098	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0099	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0100	12213	1	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0101	12213	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0102	12213	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH5_chr5_13685328_13949688	0/0	c0001	13875	4	0	2	0	2	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0002	13875	4	1	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0003	13875	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0004	13875	3	1	2	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0005	13875	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0006	13875	3	0	2	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0007	13875	3	0	3	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0008	13875	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0009	13875	2	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0010	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0011	13875	2	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0012	13875	2	0	1	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0013	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0014	13875	2	1	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0015	13875	2	0	0	1	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0016	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0017	13875	2	0	2	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0018	13875	2	0	1	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0019	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0020	13875	2	0	1	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0021	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0022	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0023	13875	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0024	13875	2	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0025	13875	2	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688