JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH5_chr5_13685328_13949688	0/0	c0076	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0077	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0078	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0079	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0080	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0081	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0082	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0083	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0084	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0085	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0086	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0087	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0088	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0089	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0090	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0091	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0092	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0093	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0094	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0095	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0096	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0097	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0098	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0099	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0100	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0101	13875	1	0	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0102	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0103	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0104	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0105	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0106	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0107	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/1	c0108	13875	1	0	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0109	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0110	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0111	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0112	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0113	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0114	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0115	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0116	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0117	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0118	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0119	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0120	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0121	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0122	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0123	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0124	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0125	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688