JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
DNAH5_chr5_13685328_13949688	0/0	c0126	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0127	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0128	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0129	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0130	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0131	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0132	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0133	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0134	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0135	13875	1	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0136	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0137	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0138	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0139	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0140	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0141	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0142	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0143	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0144	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0145	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0146	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0147	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0148	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0149	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0150	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0151	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0152	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0153	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0154	13875	1	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0155	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0156	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0157	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0158	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0159	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0160	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0161	13875	1	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0162	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0163	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0164	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0165	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0166	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0167	13875	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0168	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0169	13875	1	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0170	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0171	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0172	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0173	13875	1	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0174	13875	1	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0175	13875	1	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688