Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY9_chr16_3957653_4121442	0/0	c0049	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0050	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0051	4062	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0052	4062	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0053	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0054	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0055	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0056	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0057	4062	1	0	0	0	1	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0058	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0059	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0060	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0061	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0062	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0063	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCYAP1R1_chr7_31047308_31116474	1/1	c0001	1407	311	77	65	119	10	38	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0002	1407	3	0	0	3	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0003	1407	2	0	0	2	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0004	1407	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0005	1407	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0006	1407	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0007	1407	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0008	1407	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1_chr18_899871_917172	0/1	c0001	531	263	49	40	137	8	28	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0002	531	92	2	26	52	6	6	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	1/0	c0003	531	65	35	11	16	0	2	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0004	531	42	7	9	16	2	8	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0005	531	11	2	2	4	2	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0006	531	5	0	0	5	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0007	531	5	2	0	2	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0008	531	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0009	531	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0010	531	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0011	531	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	c0012	531	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADD1_chr4_2838844_2935062	1/1	c0001	2400	215	61	53	64	12	23	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0002	2400	74	5	12	47	2	8	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0003	2400	11	11	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0004	2400	5	5	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0005	2400	4	4	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0006	2400	2	0	1	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0007	2400	2	0	2	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0008	2400	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0009	2400	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0010	2400	1	0	0	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0011	2400	1	0	0	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0012	2400	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0013	2400	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	c0014	2400	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062