JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH5_chr5_13685328_13949688	0/0	c0176	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0177	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0178	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0179	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0180	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0181	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0182	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0183	13875	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0184	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0185	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0186	13875	1	0	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0187	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0188	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0189	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0190	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0191	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0192	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0193	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0194	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0195	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0196	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0197	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0198	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0199	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0200	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0201	13875	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	1/0	c0202	13875	1	0	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0203	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0204	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0205	13875	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	c0206	13875	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH6_chr2_84511498_84824589	0/1	c0001	12477	24	5	8	5	0	5	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0002	12477	8	1	4	2	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0003	12477	7	7	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0004	12477	5	3	2	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0005	12477	5	4	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0006	12477	5	0	1	3	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0007	12477	4	0	2	0	1	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0008	12477	4	0	3	0	1	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0009	12477	4	4	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0010	12477	3	3	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0011	12477	3	3	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0012	12477	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0013	12477	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0014	12477	2	1	0	0	1	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0015	12477	2	1	0	0	1	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0016	12474	2	1	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0017	12477	2	0	0	0	0	2	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0018	12477	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0019	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589