JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH6_chr2_84511498_84824589	0/0	c0020	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0021	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0022	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0023	12477	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0024	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0025	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0026	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0027	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0028	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0029	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0030	12477	1	0	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0031	12477	1	0	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0032	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0033	12477	1	0	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0034	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0035	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0036	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0037	12477	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0038	12477	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0039	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0040	12477	1	0	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0041	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0042	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	1/0	c0043	12477	1	0	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0044	12477	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0045	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0046	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0047	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	c0048	12477	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH7_chr2_195732703_196073837	0/0	c0001	12075	56	3	12	33	3	5	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0002	12075	34	0	2	31	1	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	1/0	c0003	12075	11	10	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0004	12075	11	3	2	5	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/1	c0005	12075	10	0	7	0	0	2	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0006	12075	9	2	1	5	1	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0007	12075	9	9	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0008	12075	9	9	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0009	12075	8	8	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0010	12075	6	0	3	0	2	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0011	12075	5	5	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0012	12075	5	1	3	0	1	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0013	12075	4	4	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0014	12075	4	0	1	3	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0015	12075	4	0	1	3	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0016	12075	4	3	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0017	12075	3	0	2	0	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0018	12075	3	3	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0019	12075	3	3	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0020	12075	2	0	0	2	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	c0021	12075	2	2	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837