JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH9_chr17_11593470_11974748	0/0	c0059	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0060	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0061	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0062	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0063	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0064	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0065	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0066	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0067	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0068	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0069	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0070	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0071	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0072	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0073	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0074	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0075	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0076	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0077	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0078	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0079	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0080	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0081	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0082	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0083	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0084	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0085	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0086	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0087	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0088	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0089	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0090	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0091	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0092	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0093	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0094	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0095	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0096	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0097	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0098	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0099	13461	1	0	0	0	1	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0100	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0101	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0102	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0103	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0104	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0105	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0106	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0107	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0108	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748