JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH9_chr17_11593470_11974748	0/0	c0109	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0110	13461	1	0	0	0	1	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0111	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0112	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0113	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0114	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0115	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0116	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0117	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0118	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0119	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0120	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0121	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0122	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0123	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0124	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0125	13461	1	0	0	0	1	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0126	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0127	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0128	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0129	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0130	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0131	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0132	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0133	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0134	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0135	13461	1	0	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0136	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0137	13461	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0138	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0139	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0140	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0141	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0142	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0143	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0144	13461	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0145	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0146	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0147	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0148	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0149	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	c0150	13461	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAI1_chr9_34453805_34525984	1/1	c0001	2100	255	37	52	129	9	26	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0002	2100	40	19	12	4	2	3	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0003	2100	30	2	5	23	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0004	2100	14	0	0	10	1	3	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0005	2100	10	0	5	1	3	1	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0006	2100	8	8	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0007	2100	5	4	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0008	2100	3	2	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984