JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAI1_chr9_34453805_34525984	0/0	c0009	2100	3	2	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0010	2100	2	2	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0011	2100	2	2	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0012	2100	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0013	2100	1	1	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0014	2100	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0015	2100	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0016	2100	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0017	2100	1	0	0	0	1	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0018	2100	1	1	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0019	2100	1	0	0	0	0	1	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0020	2100	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	c0021	2100	1	0	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI2_chr17_74269234_74319884	0/0	c0001	1818	161	18	33	90	3	17	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/1	c0002	1818	76	10	13	35	7	10	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0003	1818	30	20	2	4	0	4	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	1/0	c0004	1818	24	1	1	18	0	3	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0005	1818	17	1	7	0	2	7	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0006	1818	10	10	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0007	1818	10	0	0	10	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0008	1818	8	2	0	6	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0009	1818	7	0	0	7	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0010	1818	6	5	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0011	1818	6	3	3	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0012	1818	6	6	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0013	1818	4	3	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0014	1818	3	0	0	0	0	3	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0015	1818	3	2	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0016	1818	2	0	0	2	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0017	1818	2	2	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0018	1818	2	2	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0019	1818	2	1	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0020	1818	2	2	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0021	1818	2	2	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0022	1818	1	0	0	0	0	1	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0023	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0024	1818	1	0	0	0	0	1	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0025	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0026	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0027	1818	1	0	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0028	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0029	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0030	1818	1	0	0	1	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0031	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0032	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0033	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0034	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0035	1818	1	0	0	1	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	c0036	1818	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI3_chr1_85057327_85138138	1/1	c0001	2676	228	43	39	109	11	24	copy fasta	DNAI3	chr1	85057327	85138138