Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADD2_chr2_70651784_70773200	1/1	c0001	2181	274	62	57	96	14	43	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0002	2181	10	7	3	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0003	2181	4	4	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0004	2181	3	3	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0005	2181	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0006	2181	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0007	2181	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0008	2181	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0009	2181	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0010	2181	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0011	2181	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0012	2181	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	c0013	2181	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD3_chr10_110002984_110140565	1/1	c0001	2121	255	64	30	128	2	29	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0002	2121	9	9	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0003	2121	6	6	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0004	2121	4	0	0	4	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0005	2121	3	2	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0006	2121	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0007	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0008	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0009	2121	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0010	2121	1	0	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0011	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0012	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0013	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0014	2121	1	0	0	0	0	1	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0015	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	c0016	2121	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADGB_chr6_146593972_146820462	0/0	c0001	5004	33	0	2	29	1	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0002	5004	26	1	4	20	0	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0003	5004	20	0	10	5	1	4	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0004	5004	17	0	5	9	3	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0005	5004	12	5	2	3	0	2	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0006	5004	9	0	1	6	0	2	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/1	c0007	5004	9	3	3	2	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0008	5004	8	1	4	3	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0009	5004	8	1	0	3	0	4	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0010	5004	6	0	3	3	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0011	5004	6	4	1	1	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0012	5004	5	1	0	4	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0013	5004	5	2	1	1	0	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0014	5004	5	1	2	0	1	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0015	5004	5	1	0	3	0	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0016	5004	5	3	0	0	2	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0017	5004	4	4	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0018	5004	4	0	2	2	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0019	5004	4	1	1	2	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0020	5004	3	3	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0021	5004	3	3	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462