JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAI3_chr1_85057327_85138138	0/0	c0002	2676	86	28	17	37	3	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0003	2677	27	0	7	19	1	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0004	2676	9	8	1	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0005	2676	8	7	1	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0006	2677	5	0	0	4	0	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0007	2676	3	0	0	0	0	3	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0008	2676	3	3	0	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0009	2676	1	0	1	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0010	2676	1	0	0	0	0	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0011	2676	1	0	0	0	1	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0012	2676	1	0	0	1	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	c0013	2676	1	1	0	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI4_chr1_66807885_66929856	0/0	c0001	2547	80	27	14	25	7	7	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/1	c0002	2547	68	27	14	12	4	10	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0003	2547	32	1	9	19	0	3	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0004	2547	26	2	2	15	0	7	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0005	2547	18	8	2	4	2	2	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	1/0	c0006	2547	17	3	6	4	1	2	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0007	2547	5	0	1	2	0	2	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0008	2547	4	0	2	2	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0009	2547	3	0	0	2	0	1	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0010	2547	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0011	2547	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0012	2547	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0013	2547	1	0	0	1	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0014	2547	1	1	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0015	2547	1	1	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0016	2547	1	0	0	1	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	c0017	2547	1	0	0	1	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI7_chr12_25103289_25200160	0/1	c0001	2169	221	65	46	70	7	32	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0002	2169	89	12	25	39	5	8	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0003	2169	11	10	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0004	2169	3	3	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0005	2169	3	0	0	3	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	1/0	c0006	2169	2	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0007	2169	1	0	0	0	0	1	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0008	2169	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0009	2169	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0010	2169	1	1	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0011	2169	1	1	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0012	2169	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	c0013	2169	1	0	0	0	0	1	copy fasta	DNAI7	chr12	25103289	25200160
DNAJA1_chr9_33020273_33044907	0/0	c0001	1194	277	72	48	134	6	17	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	1/1	c0002	1194	162	17	34	76	8	25	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	c0003	1194	3	0	0	3	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	c0004	1194	1	1	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	c0005	1194	1	0	0	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA2_chr16_46950362_46978674	1/1	c0001	1239	276	78	56	101	12	27	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	c0002	1239	2	0	0	2	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	c0003	1239	1	0	0	0	0	1	copy fasta	DNAJA2	chr16	46950362	46978674