JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJA2_chr16_46950362_46978674	0/0	c0004	1239	1	0	0	1	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA3_chr16_4420868_4461775	0/0	c0001	1443	195	51	44	75	6	19	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0002	1443	111	24	18	46	9	14	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/1	c0003	1443	13	0	8	2	1	1	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0004	1443	12	11	1	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0005	1443	3	3	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0006	1443	2	2	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0007	1443	2	2	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0008	1443	1	0	0	0	0	1	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0009	1443	1	1	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0010	1443	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0011	1443	1	0	1	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0012	1443	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0013	1443	1	0	0	0	0	1	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	c0014	1443	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA4_chr15_78259562_78287191	0/0	c0001	1194	199	34	36	93	9	27	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	1/1	c0002	1194	149	27	14	89	2	15	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0003	1194	84	32	20	23	5	4	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0004	1194	2	0	2	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0005	1194	2	0	0	0	0	2	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0006	1194	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0007	1194	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0008	1194	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0009	1194	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0010	1194	1	0	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	c0011	1194	1	0	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJB11_chr3_186565720_186590793	1/1	c0001	1077	247	46	58	100	11	30	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	c0002	1077	120	46	16	37	7	14	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	c0003	1077	2	2	0	0	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	c0004	1077	1	0	0	1	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB12_chr10_72327863_72359919	1/1	c0001	1128	280	87	57	82	10	42	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0002	1128	2	0	2	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0003	1128	2	0	0	2	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0004	1128	2	2	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0005	1128	2	0	0	2	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0006	1128	2	1	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0007	1128	1	0	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	c0008	1128	1	0	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB13_chr11_73946026_73975281	0/0	c0001	951	168	67	18	64	4	15	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	1/1	c0002	951	131	7	28	74	5	15	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0003	951	112	25	25	48	5	9	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0004	951	12	0	7	4	0	1	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0005	951	9	1	4	0	0	4	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0006	951	2	0	0	0	0	2	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0007	951	1	0	0	1	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	c0008	951	1	0	0	1	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB14_chr4_99891248_99951618	1/1	c0001	1140	324	71	66	141	10	34	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	c0002	1140	10	10	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	c0003	1140	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	c0004	1140	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618