JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJB1_chr19_14509769_14523397	0/0	c0001	1023	239	48	57	103	9	22	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0002	1023	95	39	21	16	5	14	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0003	1023	5	0	0	0	0	5	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0004	1023	4	4	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0005	1023	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0006	1023	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0007	1023	1	0	0	1	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0008	1023	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0010	1023	1	0	0	0	0	1	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB2_chr2_219274366_219291895	1/1	c0001	975	425	94	79	192	14	44	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	c0002	975	1	0	1	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB4_chr1_77999939_78022964	1/1	c0001	1014	424	90	78	194	12	48	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB5_chr9_34984745_35003428	1/1	c0001	1263	448	96	79	215	12	44	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	c0002	1263	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	c0003	1263	1	0	1	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB6_chr7_157332004_157422439	1/1	c0001	981	365	95	72	147	10	39	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0002	981	2	0	0	1	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0003	981	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0004	981	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0005	981	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0006	981	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	c0007	981	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB7_chr22_40854549_40867113	1/1	c0001	930	356	84	47	167	17	39	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0002	930	17	0	1	15	0	1	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0003	931	16	0	15	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0004	930	5	5	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0005	930	5	3	1	0	0	1	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0006	930	5	0	2	0	1	2	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0007	930	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0008	930	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0009	930	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0010	930	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0011	930	1	0	0	0	0	1	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	c0012	930	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB8_chr3_128457437_128471890	0/1	c0001	699	179	28	41	77	9	23	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0002	699	116	3	12	85	5	11	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	1/0	c0003	699	76	34	7	27	0	7	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0004	699	44	14	14	11	1	4	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0005	699	8	0	3	5	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0006	699	8	8	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0007	699	5	5	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0008	699	3	0	3	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0009	699	3	0	0	3	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0010	699	3	0	0	3	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0011	699	2	1	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0012	699	2	0	0	0	0	2	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0013	699	2	0	0	0	1	1	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0014	699	1	0	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890