JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJB8_chr3_128457437_128471890	0/0	c0015	699	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0016	699	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0017	699	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0018	699	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0019	699	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	c0020	699	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB9_chr7_108564874_108579850	0/0	c0001	672	213	30	36	124	3	20	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	1/1	c0002	672	208	54	36	82	11	23	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	c0003	672	12	12	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	c0004	672	1	0	0	0	0	1	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJC10_chr2_182711257_182799464	1/0	c0001	2382	102	11	20	60	3	7	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0002	2382	88	7	20	46	5	10	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0003	2382	72	27	11	32	0	2	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0004	2382	19	1	0	16	0	2	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0005	2382	17	16	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0006	2382	3	2	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0007	2382	2	2	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/1	c0008	2382	1	0	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0009	2382	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0010	2382	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0011	2382	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0012	2382	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0013	2382	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	c0014	2382	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC11_chr1_6629170_6706816	0/0	c0001	1680	217	62	31	86	7	31	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	1/1	c0002	1680	80	18	5	48	0	7	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0003	1680	48	14	27	0	4	3	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0004	1680	15	1	9	0	2	3	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0005	1680	2	0	1	0	1	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0006	1680	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0008	1680	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	c0009	1680	1	0	1	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC12_chr10_67791669_67843188	1/1	c0001	597	294	76	47	121	13	35	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	c0002	597	76	4	9	57	1	5	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	c0003	597	11	9	2	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	c0004	597	1	0	0	1	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	c0005	597	1	1	0	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	c0006	597	1	0	0	1	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC13_chr3_132412502_132544032	0/1	c0001	6732	193	69	29	80	4	10	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	1/0	c0002	6732	45	1	19	14	2	8	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0003	6732	41	1	5	27	0	8	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0004	6732	5	0	3	0	1	1	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0005	6732	4	4	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0006	6732	4	0	3	0	0	1	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0007	6732	3	0	2	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0008	6732	3	0	2	0	1	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0009	6732	3	3	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0010	6732	2	0	2	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0011	6732	2	0	0	0	0	2	copy fasta	DNAJC13	chr3	132412502	132544032