JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJC13_chr3_132412502_132544032	0/0	c0012	6732	2	0	2	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0013	6732	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0014	6732	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0015	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0016	6732	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0017	6732	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0018	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0019	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0020	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0021	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0022	6732	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	c0023	6732	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC14_chr12_55815985_55834587	1/1	c0001	2109	414	91	78	186	18	39	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0002	2109	2	2	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0003	2109	2	0	0	2	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0004	2109	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0005	2109	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0006	2109	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0007	2109	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0008	2109	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0009	2109	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0010	2109	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	c0011	2109	1	0	0	0	0	1	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC15_chr13_43018586_43119213	1/1	c0001	453	203	27	40	103	10	21	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0002	453	74	17	16	32	1	8	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0003	453	66	30	10	18	3	5	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0004	453	6	6	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0005	453	1	0	0	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0006	453	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	c0007	453	1	0	0	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC16_chr1_15521848_15576733	1/1	c0001	2349	250	37	50	121	12	28	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0002	2349	99	45	23	19	4	8	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0003	2349	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0004	2349	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0005	2349	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0006	2349	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0007	2349	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0008	2349	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	c0009	2349	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC17_chr15_40760161_40812473	1/1	c0001	915	324	61	61	143	16	41	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	c0002	915	28	25	2	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	c0003	915	4	0	4	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	c0004	915	1	0	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	c0005	915	1	0	0	0	0	1	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC18_chr5_139405203_139444525	1/0	c0001	1077	192	70	29	77	6	9	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/1	c0002	1077	115	9	24	54	8	19	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	c0003	1077	2	0	0	2	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	c0004	1077	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	c0005	1077	1	0	1	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	c0006	1077	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525