JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJC18_chr5_139405203_139444525	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC19_chr3_180978709_180994736	1/1	c0001	351	397	88	74	170	18	45	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	c0002	351	1	0	0	0	0	1	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC1_chr10_21751548_22008730	1/1	c0001	1665	144	67	53	10	3	9	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0002	1665	15	2	7	1	2	3	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0003	1665	1	0	0	1	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0004	1665	1	0	1	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0005	1665	1	0	1	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0006	1665	1	0	0	0	1	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	c0007	1665	1	1	0	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC21_chr5_34924559_34963964	1/1	c0001	1596	391	90	69	179	13	38	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0002	1596	17	0	5	8	0	4	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0003	1596	4	4	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0004	1596	4	0	1	0	3	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0005	1596	2	0	0	0	2	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0006	1596	2	0	0	2	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0007	1596	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0009	1596	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0010	1596	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0011	1596	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0013	1596	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	c0014	1596	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC22_chr12_49341888_49358690	1/1	c0001	1026	354	91	63	146	16	36	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0002	1026	3	0	0	3	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0003	1026	1	0	0	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0004	1026	1	0	1	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0005	1026	1	0	0	0	0	1	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0006	1026	1	0	0	0	0	1	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	c0007	1026	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC24_chr11_31364860_31437835	1/1	c0001	450	351	88	63	146	8	44	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	c0002	450	2	2	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	c0003	450	1	0	1	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC25_chr9_111626334_111659345	1/1	c0001	1083	234	45	46	97	10	34	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0002	1083	76	32	27	11	4	2	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0003	1083	67	0	4	58	0	5	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0004	1083	20	17	2	0	0	1	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0005	1083	7	0	0	7	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0006	1083	4	0	0	4	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0007	1083	2	0	0	0	0	2	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0008	1083	1	0	0	1	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	c0009	1083	1	0	1	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC27_chr2_24938642_24976955	0/1	c0001	822	209	26	43	110	8	21	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	1/0	c0002	822	125	34	15	53	5	17	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	c0003	822	47	36	6	0	1	4	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	c0004	822	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC28_chr21_33483055_33496716	0/1	c0001	1167	339	84	62	142	15	35	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	c0002	1162	61	0	12	37	3	9	copy fasta	DNAJC28	chr21	33483055	33496716