JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJC28_chr21_33483055_33496716	0/0	c0003	1167	10	8	2	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	c0004	1167	2	2	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	c0005	1167	1	1	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	c0006	1167	1	1	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC2_chr7_103307289_103349767	1/0	c0001	1866	391	82	62	192	11	43	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	c0002	1866	5	1	4	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/1	c0003	1866	5	0	2	0	1	1	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	c0004	1866	3	3	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	c0005	1866	1	1	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	c0006	1866	1	1	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC30_chr7_73675918_73688453	1/0	c0001	681	160	55	16	74	2	12	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/1	c0002	681	86	9	20	47	3	6	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0003	681	78	3	19	31	7	18	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0004	681	39	20	11	1	1	6	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0005	681	6	5	1	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0006	681	5	1	3	0	1	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0007	681	2	0	0	2	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0008	681	1	0	0	1	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0009	681	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0010	681	1	0	0	1	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	c0011	681	1	0	0	1	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC3_chr13_95672139_95799988	1/1	c0001	1515	365	83	58	168	16	38	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0002	1515	2	0	0	2	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0003	1515	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0004	1515	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0005	1515	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0006	1515	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0007	1515	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0008	1515	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	c0009	1515	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC4_chr11_64225548_64239281	1/1	c0001	726	335	90	66	137	6	34	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	c0002	726	2	0	0	2	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	c0003	806	1	0	0	1	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC5B_chr8_66016553_66106245	1/1	c0001	600	228	66	55	69	12	24	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	c0002	600	22	18	1	0	0	3	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	c0003	600	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	c0004	588	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	c0005	600	1	0	0	0	0	1	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	c0006	600	1	0	0	1	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5G_chr2_27270433_27286499	1/1	c0001	570	320	72	71	123	16	36	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	c0002	570	17	14	3	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	c0003	570	2	0	0	2	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	c0004	570	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5_chr20_63890126_63941011	1/1	c0001	597	358	90	63	147	14	42	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	c0002	597	10	2	3	5	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	c0003	597	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	c0004	597	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	c0005	597	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	c0006	597	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011