JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAJC6_chr1_65304543_65420871	1/1	c0001	2913	93	3	33	39	5	11	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0002	2913	92	23	6	56	0	7	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0003	2913	86	13	30	25	6	12	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0004	2913	17	4	0	6	1	6	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0005	2913	11	8	2	0	1	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0006	2913	7	6	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0007	2913	4	4	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0008	2913	2	2	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0009	2913	2	2	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0010	2913	2	1	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0011	2913	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0012	2913	1	0	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0013	2913	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0014	2913	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0015	2913	1	0	0	0	1	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0016	2913	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0017	2913	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0018	2913	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0019	2913	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	c0020	2913	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC7_chr17_41971435_42022439	1/1	c0001	1485	262	60	61	106	9	24	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	c0002	1485	71	22	7	33	3	6	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	c0003	1485	2	0	0	2	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	c0004	1485	1	1	0	0	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	c0005	1485	1	1	0	0	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	c0006	1485	1	0	0	1	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC8_chr1_28195278_28238029	1/1	c0001	762	249	93	58	58	12	26	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	c0002	762	1	1	0	0	0	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC9_chr10_73236954_73252255	1/1	c0001	783	268	65	48	117	8	28	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0002	783	121	28	9	72	0	12	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0003	783	1	0	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0004	783	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0005	783	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0006	783	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0007	783	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0008	783	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	c0009	783	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAL1_chr14_73639986_73708732	1/1	c0001	573	339	90	67	128	14	38	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	c0002	573	1	0	1	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL4_chr22_38773508_38799143	1/0	c0001	318	202	57	49	60	9	26	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/1	c0002	318	168	33	19	90	5	20	copy fasta	DNAL4	chr22	38773508	38799143
DNALI1_chr1_37551940_37571857	1/0	c0001	777	298	71	52	128	12	34	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/1	c0002	777	92	9	17	51	6	8	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0003	777	5	5	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0004	777	3	0	3	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0005	777	3	0	3	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0006	777	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0007	777	1	0	0	1	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0008	777	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	c0009	777	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857