JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNALI1_chr1_37551940_37571857	0/0	c0010	777	1	0	1	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNASE1L1_chrX_154396236_154414254	1/1	c0001	909	189	27	35	91	9	25	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0002	909	74	36	24	10	1	3	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0003	909	10	10	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0004	909	2	0	0	0	1	1	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0005	897	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0006	909	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0007	909	1	0	0	0	0	1	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	c0008	910	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L2_chr16_2231444_2243711	1/1	c0001	900	410	100	72	173	16	47	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	c0002	900	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	c0003	900	1	0	0	0	0	1	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	c0004	900	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	c0005	900	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L3_chr3_58187257_58215972	1/1	c0001	918	183	61	38	54	9	19	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0002	918	138	14	24	80	3	17	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0003	918	30	22	6	0	1	1	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0004	918	10	0	5	5	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0005	918	4	0	3	0	1	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0006	918	2	0	2	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0007	918	1	0	0	0	0	1	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0008	918	1	0	0	1	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0009	918	1	0	0	1	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0010	918	1	0	0	1	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	c0011	918	1	1	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1_chr16_3649691_3663095	1/1	c0001	849	203	15	47	101	10	28	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0002	849	181	49	19	98	2	13	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0003	849	13	13	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0004	849	9	6	2	0	1	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0005	849	7	0	5	0	1	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0006	849	6	6	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0007	849	4	0	0	4	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0008	849	2	2	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0009	849	1	1	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0010	849	1	1	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0011	849	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0012	847	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0013	849	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0014	849	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0015	849	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0016	849	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0017	849	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0018	849	1	1	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0019	849	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0020	849	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0021	849	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0022	849	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	c0023	849	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE2B_chr1_84393484_84420018	1/0	c0001	1086	204	29	39	112	4	19	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0002	1086	96	5	17	59	3	12	copy fasta	DNASE2B	chr1	84393484	84420018