JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNASE2B_chr1_84393484_84420018	0/0	c0003	1086	39	18	9	9	1	2	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/1	c0004	1086	36	15	6	5	2	7	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0005	1086	13	12	1	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0006	1086	12	3	6	2	1	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0007	1086	7	1	2	3	0	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0008	1086	5	0	0	4	0	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0009	1086	4	4	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0010	1086	2	2	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0011	1086	2	0	0	0	1	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0012	1086	2	2	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0013	1086	2	2	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0014	1086	1	0	0	0	0	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	c0015	1086	1	1	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2_chr19_12870209_12886449	1/0	c0001	1083	215	70	46	63	13	22	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/1	c0002	1083	147	18	23	88	5	12	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0003	1083	4	4	0	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0004	1083	2	1	1	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0006	1083	1	0	0	1	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0007	1083	1	0	0	0	0	1	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DND1_chr5_140665794_140678576	0/1	c0001	1062	208	63	29	89	11	15	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	1/0	c0002	1062	160	23	33	79	5	19	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	c0003	1062	4	4	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	c0004	1062	4	4	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	c0005	1062	2	0	2	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DNER_chr2_229352629_229719555	1/1	c0001	2214	132	39	26	39	5	21	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0002	2214	20	11	3	1	3	2	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0003	2202	6	5	1	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0004	2214	3	3	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0005	2214	2	2	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0006	2214	2	0	1	0	0	1	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0007	2214	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0008	2214	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0009	2214	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0010	2214	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0011	2214	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0012	2214	1	0	1	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0013	2214	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0014	2214	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0015	2214	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0016	2214	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	c0017	2202	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNHD1_chr11_6492280_6577020	0/0	c0001	14274	68	2	17	41	4	4	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0002	14274	18	1	2	12	1	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0003	14274	14	2	4	5	0	3	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0004	14274	8	0	3	4	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0005	14274	7	1	5	0	1	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0006	14274	6	6	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0007	14274	6	0	4	2	0	0	copy fasta	DNHD1	chr11	6492280	6577020