JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNHD1_chr11_6492280_6577020	0/0	c0008	14274	6	1	1	4	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0009	14274	6	0	2	0	2	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0010	14274	6	6	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0011	14274	6	5	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0012	14274	5	0	1	4	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0013	14274	5	5	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0014	14274	4	1	0	1	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0015	14274	4	4	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0016	14274	3	2	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0017	14274	3	3	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0018	14274	3	0	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/1	c0019	14274	3	0	1	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0020	14274	3	0	0	2	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0021	14274	3	0	0	2	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0022	14274	3	1	0	0	2	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0023	14274	3	0	3	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0024	14274	3	0	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0025	14274	3	0	1	2	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0026	14274	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0027	14274	2	0	1	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0028	14274	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0029	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0030	14274	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0031	14274	2	0	0	0	2	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0032	14274	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0033	14274	2	0	0	0	2	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0034	14274	2	1	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0035	14274	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0036	14274	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0037	14274	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0038	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0039	14274	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0040	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0041	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0042	14274	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0043	14274	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0044	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0045	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0046	14274	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0047	14274	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0048	14274	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0049	14274	2	0	0	2	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0050	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0051	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0052	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0053	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0054	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0055	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0056	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0057	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020