JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNHD1_chr11_6492280_6577020	0/0	c0108	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0109	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0110	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0111	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0112	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0113	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0114	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0115	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0116	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0117	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0118	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0119	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0120	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0121	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0122	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0123	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0124	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0125	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0126	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0127	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0128	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0129	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0130	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0131	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0132	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0133	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0134	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0135	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0136	14274	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0137	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0138	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0139	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0140	14274	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0141	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0142	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0143	14274	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	c0144	14274	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNLZ_chr9_136354483_136368744	1/0	c0001	537	337	80	71	133	10	42	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0002	537	37	7	0	25	1	4	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/1	c0003	537	29	1	3	22	2	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0004	570	7	3	3	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0005	537	2	2	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0006	537	1	0	0	0	1	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0007	537	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0008	537	1	0	1	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0009	537	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0010	570	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	c0011	570	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNM1L_chr12_32674301_32750650	1/1	c0001	2211	173	65	46	32	5	23	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	c0002	2211	43	19	8	9	2	5	copy fasta	DNM1L	chr12	32674301	32750650