JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNM1L_chr12_32674301_32750650	0/0	c0003	2211	10	5	1	1	0	3	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	c0004	2211	2	0	1	0	1	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	c0005	2211	1	0	0	0	0	1	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	c0006	2211	1	1	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1_chr9_128198379_128260244	1/0	c0001	2595	143	49	23	55	6	9	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/1	c0002	2595	122	4	22	64	8	23	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0003	2595	31	22	5	0	2	2	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0004	2595	20	11	5	0	0	4	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0005	2595	13	0	0	12	0	1	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0006	2595	6	0	0	6	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0007	2595	3	3	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0008	2595	2	0	0	0	0	2	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0009	2595	2	0	0	2	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0010	2595	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0011	2595	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0012	2595	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0013	2595	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0014	2595	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0015	2595	1	0	1	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0016	2595	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	c0017	2595	1	0	0	0	0	1	copy fasta	DNM1	chr9	128198379	128260244
DNM2_chr19_10713079_10836903	1/1	c0001	2613	139	40	34	35	5	23	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0002	2613	125	17	20	72	3	13	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0003	2613	5	0	0	5	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0004	2613	2	0	2	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0005	2613	2	1	0	0	1	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0006	2613	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0007	2613	1	0	0	1	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0008	2648	1	0	0	0	1	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0009	2613	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	c0010	2613	1	0	0	1	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM3_chr1_171836498_172417717	0/1	c0001	2592	65	9	14	20	6	15	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0002	2592	61	44	6	6	1	4	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0003	2592	3	0	0	1	0	2	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	1/0	c0004	2592	1	0	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0005	2592	1	0	0	1	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0006	2592	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0007	2592	1	0	0	0	1	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0008	2592	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0009	2592	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	c0010	2592	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNMBP_chr10_99870577_100014947	1/0	c0001	4734	67	9	23	22	3	9	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/1	c0002	4734	58	14	19	16	4	4	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0003	4734	21	12	2	6	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0004	4734	21	0	0	19	0	2	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0005	4734	16	5	5	5	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0006	4734	15	13	2	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0007	4734	12	3	4	1	1	3	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0008	4734	9	7	2	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0009	4734	7	3	1	0	1	2	copy fasta	DNMBP	chr10	99870577	100014947