JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNMBP_chr10_99870577_100014947	0/0	c0010	4734	7	0	0	7	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0011	4734	6	3	2	0	1	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0012	4734	5	0	3	0	1	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0013	4734	3	0	0	3	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0014	4734	3	3	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0015	4734	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0016	4734	2	0	0	0	0	2	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0017	4734	2	1	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0018	4734	2	1	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0019	4734	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0020	4734	2	0	0	2	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0021	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0022	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0023	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0024	4734	1	0	0	0	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0025	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0026	4734	1	0	0	0	1	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0027	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0028	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0029	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0030	4734	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0031	4734	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	c0032	4734	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMT1_chr19_10128346_10199953	0/0	c0001	4899	151	37	30	66	5	13	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0002	4899	95	25	21	35	4	10	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0003	4899	62	18	9	23	0	12	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0004	4899	22	0	1	21	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/1	c0005	4899	12	1	5	0	3	2	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0006	4899	8	0	0	8	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0007	4899	6	0	0	6	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0008	4899	4	0	0	4	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	1/0	c0009	4899	2	0	1	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0010	4899	2	2	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0011	4899	2	0	0	2	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0012	4899	2	2	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0013	4899	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0014	4899	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0015	4899	1	0	0	0	0	1	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0016	4899	1	0	1	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0017	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0018	4899	1	0	0	0	0	1	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0019	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0020	4899	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0021	4899	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0022	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0023	4899	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0024	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0025	4899	1	0	0	0	0	1	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0026	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0027	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953