JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNMT1_chr19_10128346_10199953	0/0	c0028	4899	1	0	1	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0029	4899	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	c0030	4899	1	0	1	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT3A_chr2_25222874_25346925	1/1	c0001	2739	197	43	41	81	8	22	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0002	2739	65	17	14	29	2	3	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0003	2739	15	0	2	7	0	6	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0004	2739	6	6	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0005	2739	5	1	1	1	1	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0006	2739	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0007	2739	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0008	2739	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0009	2739	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0010	2739	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	c0011	2739	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3B_chr20_32757385_32814356	0/1	c0001	2562	194	51	27	88	5	22	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	1/0	c0002	2562	55	7	26	1	5	15	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0003	2562	13	10	3	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0004	2562	8	8	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0005	2562	5	0	0	0	0	5	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0006	2562	4	3	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0007	2562	4	4	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0008	2562	3	3	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0009	2562	3	3	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0010	2562	1	0	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0011	2562	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0012	2562	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0013	2562	1	0	0	0	0	1	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0014	2562	1	0	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0015	2562	1	0	0	0	0	1	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0016	2562	1	0	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0017	2562	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	c0018	2562	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3L_chr21_44241339_44266897	1/1	c0001	1161	287	64	62	115	8	36	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0002	1161	55	22	12	11	4	6	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0003	1161	26	0	0	26	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0004	1161	11	0	0	11	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0005	1161	2	0	2	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0006	1161	2	2	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0008	1161	1	0	0	1	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0009	1161	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0010	1161	1	0	0	1	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0011	1161	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0012	1161	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0013	1161	1	0	1	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0014	1161	1	0	1	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	c0015	1161	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNPEP_chr2_219367043_219392912	1/1	c0001	1458	324	67	72	142	11	30	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0002	1458	27	13	0	12	0	2	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0003	1458	8	8	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912