JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNPEP_chr2_219367043_219392912	0/0	c0004	1458	2	0	0	0	0	2	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0005	1458	2	2	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0006	1458	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0007	1458	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0008	1458	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0009	1458	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0010	1458	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0011	1458	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	c0012	1458	1	0	0	0	1	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPH1_chr6_43220629_43234481	1/0	c0001	525	396	95	72	175	16	37	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/1	c0002	525	11	0	6	1	0	3	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	c0003	525	5	0	0	5	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	c0004	525	3	3	0	0	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	c0005	525	2	0	0	2	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	c0006	525	1	0	0	1	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNTTIP1_chr20_45786954_45816418	0/1	c0001	990	254	64	57	94	12	26	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	1/0	c0002	990	113	24	9	61	4	14	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	c0003	990	36	0	2	34	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	c0004	990	7	6	1	0	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	c0005	990	1	0	0	1	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	c0006	990	1	0	1	0	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP2_chr1_93861284_93884206	0/0	c0001	2271	120	10	17	68	7	18	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	1/0	c0002	2271	90	18	18	35	4	14	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/1	c0003	2271	88	20	27	34	2	4	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0004	2271	27	13	4	9	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0005	2271	19	18	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0006	2271	10	8	1	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0007	2271	5	0	0	5	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0008	2271	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0009	2271	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0010	2271	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0011	2271	2	0	1	0	1	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0012	2271	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0013	2271	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0014	2271	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0015	2271	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0016	2271	1	0	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0017	2271	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	c0018	2271	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTT_chr10_96299434_96343564	0/1	c0001	1530	316	81	45	142	8	39	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0002	1530	4	3	1	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	1/0	c0003	1530	2	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0004	1530	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0005	1530	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0006	1530	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0007	1530	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0008	1530	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0010	1530	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	c0011	1530	1	0	0	0	0	1	copy fasta	DNTT	chr10	96299434	96343564