JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOC2A_chr16_30000514_30016027	1/0	c0001	1203	208	61	39	78	10	19	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0002	1203	107	16	12	63	5	11	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0003	1203	4	0	2	0	1	1	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/1	c0004	1203	1	0	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0005	1203	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0006	1203	1	1	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0007	1203	1	0	0	0	0	1	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0008	1203	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0009	1203	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0010	1203	1	1	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0011	1203	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2B_chr17_137789_186650	0/1	c0001	1239	247	42	56	112	12	24	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0002	1239	68	32	12	14	4	6	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0003	1239	6	0	0	6	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0004	1239	5	0	1	0	0	4	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0005	1239	4	4	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0006	1239	4	4	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0007	1239	2	2	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0008	1239	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0009	1239	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	c0010	1239	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOCK10_chr2_224760090_225047468	1/1	c0001	6561	75	8	25	26	2	12	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0002	6561	32	22	3	4	2	1	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0003	6561	9	8	0	0	0	1	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0004	6561	6	2	1	0	1	2	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0005	6561	5	5	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0006	6561	4	0	2	0	2	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0007	6561	3	3	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0008	6561	3	3	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0009	6561	3	3	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0010	6561	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0011	6561	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0012	6561	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0013	6561	2	0	1	1	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0014	6561	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0015	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0016	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0017	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0018	6561	1	0	0	1	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0019	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0020	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0021	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0022	6561	1	0	0	0	1	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0023	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0024	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0025	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0026	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0027	6582	1	0	1	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0028	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468