JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK10_chr2_224760090_225047468	0/0	c0029	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0030	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0031	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0032	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0033	6561	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0034	6561	1	0	0	1	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0035	6561	1	0	1	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	c0036	6561	1	0	0	1	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK11_chrX_118490815_118691147	1/1	c0001	6222	104	45	21	31	0	5	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0002	6222	75	9	10	43	1	12	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0003	6222	12	0	7	0	1	4	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0004	6222	3	0	0	0	2	1	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0005	6222	2	2	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0006	6223	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0007	6222	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0008	6222	1	0	0	0	1	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0009	6222	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0010	6222	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0011	6222	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0012	6222	1	0	1	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0013	6222	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0014	6222	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0015	6222	1	0	0	0	1	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0016	6222	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0017	6222	1	0	0	0	0	1	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0018	6222	1	0	0	0	0	1	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0019	6222	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	c0020	6222	1	0	0	0	1	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK1_chr10_126900428_127457516	0/0	c0001	5661	10	7	3	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0002	5661	9	0	1	5	0	3	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	1/0	c0003	5661	7	5	1	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0004	5661	6	6	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0005	5661	6	2	2	0	0	2	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0006	5661	4	2	2	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0007	5661	4	0	1	1	0	2	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0008	5661	4	0	1	3	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0009	5661	4	0	1	3	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0010	5661	4	2	1	0	0	1	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0011	5661	3	1	2	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0012	5661	2	0	2	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0013	5661	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0014	5661	2	1	1	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0015	5661	2	1	1	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0016	5661	2	0	0	1	0	1	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0017	5661	2	0	0	0	0	2	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0018	5661	2	0	0	1	0	1	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0019	5661	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0020	5661	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0021	5661	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0022	5661	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516