Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGB_chr6_146593972_146820462	0/0	c0072	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0073	5004	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0074	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0075	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0076	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0077	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0078	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0079	5004	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	c0080	5004	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGRA1_chr10_133082924_133136675	1/1	c0001	1683	163	34	32	63	8	24	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0002	1683	116	30	19	55	3	9	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0003	1683	40	11	13	6	1	9	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0004	1683	12	0	9	0	3	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0005	1683	5	5	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0006	1683	4	0	2	2	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0007	1683	2	2	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0008	1683	2	2	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0009	1683	2	2	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0010	1683	2	2	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0011	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0012	1683	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0013	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0014	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0015	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0016	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0017	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0018	1683	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0019	1683	1	0	0	0	0	1	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0020	1683	1	0	0	0	1	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0021	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0022	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0023	1683	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0024	1683	1	0	0	0	0	1	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0025	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0026	1671	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0027	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0028	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0029	1683	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	c0030	1683	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA2_chr8_37791883_37849896	0/0	c0001	4017	132	15	34	69	1	13	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0002	4017	74	23	10	22	4	15	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	1/1	c0003	4017	61	13	20	11	6	9	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0004	4017	10	10	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0005	4017	9	0	0	7	2	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0006	4017	8	0	0	8	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0007	4017	6	0	0	6	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0008	4017	5	5	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0009	4017	5	3	0	0	0	2	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0010	4017	5	5	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0011	4018	4	0	1	2	0	1	copy fasta	ADGRA2	chr8	37791883	37849896