JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK1_chr10_126900428_127457516	0/0	c0073	5661	1	0	0	0	0	1	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0074	5661	1	0	0	0	0	1	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0075	5661	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	c0076	5661	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK2_chr5_169632275_170088382	0/0	c0001	5493	19	0	5	10	3	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	1/1	c0002	5493	12	1	6	2	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0003	5493	12	4	2	2	0	4	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0004	5493	11	1	1	6	0	3	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0005	5493	8	5	1	2	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0006	5493	7	3	0	1	0	3	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0007	5493	6	0	1	2	1	2	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0008	5493	5	3	1	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0009	5493	5	3	0	1	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0010	5493	5	0	0	3	0	2	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0011	5493	4	1	1	0	0	2	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0012	5493	3	0	1	2	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0013	5493	3	0	2	0	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0014	5493	3	1	2	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0015	5493	3	0	1	2	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0016	5493	2	1	1	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0017	5493	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0018	5493	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0019	5493	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0020	5493	2	0	0	1	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0021	5493	2	1	0	0	1	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0022	5493	2	0	1	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0023	5493	2	0	0	2	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0024	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0025	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0026	5493	1	0	0	0	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0027	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0028	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0029	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0030	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0031	5493	1	0	1	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0032	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0033	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0034	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0035	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0036	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0037	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0038	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0039	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0040	5493	1	0	1	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0041	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0042	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0043	5493	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0044	5493	1	0	0	0	1	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0045	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	c0046	5493	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382