JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK3_chr3_50669927_51389198	0/0	c0012	6093	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	c0013	6093	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	c0014	6093	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK4_chr7_111721110_112211399	0/0	c0001	5928	61	28	14	15	1	3	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0002	5928	22	20	1	1	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0003	5928	3	0	1	2	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0004	5928	3	3	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0005	5928	3	1	0	0	0	2	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0006	5928	2	2	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0007	5928	2	2	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0008	5928	2	2	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0009	5928	1	0	0	0	0	1	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0010	5928	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0011	5928	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0012	5928	1	0	1	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0013	5928	1	0	0	0	1	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0014	5928	1	0	1	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0015	5928	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	c0016	5928	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK5_chr8_25179689_25420711	0/0	c0001	5613	20	3	5	10	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0002	5613	20	15	1	0	0	4	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0003	5613	18	7	6	5	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0004	5613	16	10	0	4	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/1	c0005	5613	16	6	1	5	1	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0006	5613	13	0	9	1	1	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0007	5613	11	1	2	7	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0008	5613	7	0	1	5	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0009	5613	7	2	2	1	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0010	5613	6	2	3	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0011	5613	5	0	2	2	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0012	5613	5	3	1	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0013	5613	5	0	2	3	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0014	5613	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0015	5613	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0016	5613	3	0	2	0	1	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0017	5613	3	0	0	0	1	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0018	5613	3	2	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0019	5613	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0020	5613	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0021	5613	2	0	0	0	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0022	5613	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0023	5613	2	0	0	1	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0024	5613	2	0	0	0	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0025	5613	2	0	2	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0026	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0027	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0028	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0029	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0030	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0031	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711