JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK5_chr8_25179689_25420711	1/0	c0032	5613	1	0	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0033	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0034	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0035	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0036	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0037	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0038	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0039	5613	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0040	5613	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0041	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0042	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0043	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0044	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0045	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0046	5613	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0047	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0048	5613	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0049	5613	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0050	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0051	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0052	5613	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0053	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0054	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0055	5613	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	c0056	5613	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK6_chr19_11194295_11267524	0/0	c0001	6144	56	6	14	22	5	9	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0002	6144	49	9	8	28	2	2	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0003	6144	32	2	5	18	4	3	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	1/0	c0004	6144	18	9	1	4	0	3	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0005	6144	15	0	4	7	2	2	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0006	6144	13	1	0	11	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0007	6144	10	7	1	2	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0008	6144	10	10	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0009	6144	10	0	6	0	0	4	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0010	6144	8	0	1	5	0	2	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0011	6144	7	7	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0012	6144	6	6	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0013	6144	4	0	3	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0014	6144	3	3	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0015	6144	3	3	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/1	c0016	6144	3	0	1	0	1	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0017	6144	2	2	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0018	6144	2	2	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0019	6144	2	0	2	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0020	6144	2	0	0	2	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0021	6144	2	0	2	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0022	6144	2	0	2	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0023	6144	2	0	0	1	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0024	6144	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	c0025	6144	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524