JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK6_chr19_11194295_11267524	0/0	c0076	6144	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK7_chr1_62449726_62693386	1/1	c0001	6423	126	42	23	40	5	14	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0002	6423	70	11	15	25	7	12	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0003	6423	10	0	0	10	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0004	6423	6	6	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0005	6423	4	4	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0006	6423	3	2	1	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0007	6423	2	1	1	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0008	6423	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0009	6423	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0010	6423	1	1	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0011	6423	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0012	6423	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0013	6423	1	1	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	c0014	6423	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK8_chr9_209865_470255	0/0	c0001	6300	18	0	2	13	1	2	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0002	6300	15	0	6	7	0	2	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0003	6300	11	0	2	8	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0004	6300	11	0	2	7	1	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0005	6300	7	0	0	6	1	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0006	6300	6	0	0	6	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0007	6300	5	0	2	3	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0008	6300	4	0	3	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0009	6300	4	1	2	0	1	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0010	6300	3	0	1	0	1	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0011	6300	3	3	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0012	6300	3	2	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0013	6300	3	0	0	2	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0014	6300	2	0	2	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0015	6300	2	0	0	1	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0016	6300	2	0	0	0	0	2	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0017	6300	2	0	1	0	1	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0018	6300	2	2	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/1	c0019	6300	2	0	0	0	1	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0020	6300	2	2	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0021	6300	2	0	1	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0022	6300	2	0	1	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0023	6300	2	0	0	2	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0024	6300	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0025	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0026	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0027	6300	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0028	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0029	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0030	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0031	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0032	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0033	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0034	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0035	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255