JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK8_chr9_209865_470255	0/0	c0136	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0137	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0138	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0139	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0140	6300	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0141	6300	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0142	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0143	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0144	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0145	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0146	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0147	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0148	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0149	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0150	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0151	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0152	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0153	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0154	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0155	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0156	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0157	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0158	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0159	6300	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0160	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0161	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0162	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0163	6300	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0164	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0165	6300	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	c0166	6247	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK9_chr13_98788429_98983064	1/0	c0001	6279	194	44	33	92	9	15	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0002	6279	32	10	6	13	0	3	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0003	6279	30	6	1	21	0	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0004	6279	12	0	1	11	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0005	6279	11	11	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0006	6279	8	2	1	3	1	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0007	6279	7	2	1	2	0	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/1	c0008	6279	7	0	3	0	1	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0009	6279	6	0	4	0	2	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0010	6279	6	1	0	0	0	5	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0011	6279	4	0	1	0	0	3	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0012	6279	3	3	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0013	6279	3	2	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0014	6279	3	0	0	3	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0015	6279	2	0	1	0	1	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0016	6279	2	0	1	0	0	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0017	6279	2	2	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0018	6279	2	0	0	0	0	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0019	6279	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064