JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOCK9_chr13_98788429_98983064	0/0	c0020	6279	1	0	1	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0021	6279	1	0	0	0	0	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0022	6279	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0023	6279	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0024	6279	1	0	1	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0025	6279	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0026	6279	1	0	1	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0027	6279	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0028	6279	1	0	0	0	0	1	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0029	6279	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0030	6279	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0031	6279	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	c0032	6279	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOHH_chr19_3485824_3505674	1/1	c0001	909	379	88	74	160	12	43	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0002	909	3	3	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0003	909	3	1	1	0	0	1	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0004	909	2	1	0	1	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0005	909	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0006	909	1	0	0	1	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0007	909	1	0	1	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0008	909	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	c0009	909	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOK1_chr2_74549720_74562551	1/1	c0001	1446	322	88	58	149	3	22	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0002	1446	4	4	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0003	1446	1	0	0	0	1	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0004	1435	1	0	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0005	1446	1	0	0	0	0	1	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0006	1446	1	0	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0007	1446	1	0	0	0	0	1	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0008	1446	1	1	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	c0010	1446	1	1	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK2_chr8_21903873_21918690	1/1	c0001	1239	291	73	56	117	10	33	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0002	1239	79	6	5	64	1	3	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0003	1239	29	1	5	15	1	7	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0004	1239	10	1	5	4	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0005	1239	8	0	4	0	4	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0006	1239	3	0	0	0	0	3	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0007	1239	3	3	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0008	1239	3	1	2	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0009	1239	3	3	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0010	1239	1	0	1	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0011	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0012	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0014	1239	1	0	1	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0016	1239	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0017	1239	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0018	1239	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690