Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRA2_chr8_37791883_37849896	0/0	c0012	4017	4	0	2	1	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0013	4017	4	0	0	3	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0014	4017	4	4	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0015	4018	3	0	0	1	0	2	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0016	4017	3	0	0	3	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0017	4017	2	2	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0018	4017	2	0	0	2	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0019	4018	2	0	0	2	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0020	4017	2	0	0	1	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0021	4017	1	0	0	0	1	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0022	4017	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0023	4017	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0024	4017	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0025	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0026	4017	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0027	4017	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0028	4017	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0029	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0030	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0031	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0032	4017	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0033	4018	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0034	4018	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0035	4018	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0036	4017	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0037	4017	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0038	4017	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0039	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0040	4018	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0041	4032	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0042	4017	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0043	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0044	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	c0045	4017	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA3_chr4_22382376_22521066	0/0	c0001	3966	80	8	20	42	3	7	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	1/0	c0002	3966	56	34	8	3	2	8	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0003	3966	28	13	7	5	0	3	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0004	3966	23	0	4	14	0	5	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0005	3966	21	12	6	0	0	3	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0006	3966	9	0	4	4	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0007	3966	7	0	0	5	0	2	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0008	3966	6	0	0	6	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0009	3966	6	0	0	6	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0010	3966	5	0	0	5	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0011	3966	4	1	0	3	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0012	3966	4	0	0	4	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0013	3966	4	4	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0014	3966	3	3	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0015	3966	3	0	0	3	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0016	3966	2	1	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066