JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOK2_chr8_21903873_21918690	0/0	c0019	1239	1	0	1	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0020	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0021	1239	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	c0022	1239	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK3_chr5_177496904_177514826	1/1	c0001	1323	406	85	67	197	17	38	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0002	1323	18	3	10	3	1	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0003	1323	3	3	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0004	1323	2	2	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0005	1323	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0006	1323	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0007	1323	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0008	1323	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0009	1323	1	0	1	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0010	1323	1	0	0	0	0	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	c0011	1323	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK4_chr16_57466922_57491493	1/1	c0001	981	396	91	66	179	14	44	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0002	981	6	0	0	6	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0003	981	4	4	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0004	981	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0005	981	1	0	0	0	0	1	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0006	981	1	0	0	0	0	1	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	c0007	981	1	1	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK5_chr20_54470593_54656169	1/1	c0001	921	105	58	35	6	0	4	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	c0002	921	19	19	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	c0003	921	3	2	1	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	c0004	921	2	2	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK5_chr20_54470593_54656169	0/0	c0005	921	1	1	0	0	0	0	copy fasta	DOK5	chr20	54470593	54656169
DOK6_chr18_69395888_69854087	0/1	c0001	996	77	31	13	20	3	9	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	c0002	996	52	12	18	9	0	13	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	1/0	c0003	996	37	22	5	2	1	6	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	c0004	996	2	0	0	2	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	c0005	996	1	0	0	1	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	c0006	996	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK7_chr4_3458306_3499482	1/0	c0001	1515	179	41	51	52	10	24	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/1	c0002	1515	101	4	8	75	3	10	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0003	1515	54	11	16	14	2	11	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0004	1515	16	5	7	2	1	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0005	1515	10	10	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0006	1515	7	7	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0007	1515	5	4	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0008	1515	3	2	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0009	1515	3	3	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0010	1515	3	0	0	3	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0011	1515	2	2	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0012	1515	2	0	0	2	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0013	1515	2	2	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0014	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0016	1515	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482