JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOK7_chr4_3458306_3499482	0/0	c0018	1515	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0020	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0021	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0022	1515	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0023	1515	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0024	1515	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0025	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0026	1515	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0027	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0028	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0029	1515	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	c0030	1515	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOLK_chr9_128940530_128952603	1/1	c0001	1617	337	78	69	136	13	39	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0002	1617	5	0	0	5	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0003	1617	2	2	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0004	1617	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0005	1617	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0006	1617	1	0	0	1	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0007	1617	1	0	0	0	0	1	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0008	1617	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0009	1617	1	0	1	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	c0011	1617	1	0	0	0	1	0	copy fasta	DOLK	chr9	128940530	128952603
DOLPP1_chr9_129076111_129095438	1/1	c0001	717	265	82	40	107	8	26	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	c0002	717	107	4	30	47	6	20	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	c0003	717	38	7	2	27	0	2	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	c0004	717	2	2	0	0	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	c0005	717	1	0	0	1	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	c0006	717	1	1	0	0	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DONSON_chr21_33572551_33593684	1/1	c0001	1701	405	80	69	196	14	44	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0002	1701	7	6	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0003	1701	3	0	2	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0004	1701	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0005	1701	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0006	1701	2	1	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0007	1701	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0008	1701	1	1	0	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0009	1701	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0010	1701	1	0	0	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	c0011	1701	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DOP1A_chr6_83062671_83173471	1/0	c0001	7398	185	54	27	74	7	22	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0002	7398	57	0	11	38	3	5	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0003	7398	30	7	1	17	0	5	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/1	c0004	7398	7	1	4	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0005	7395	4	4	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0006	7398	4	4	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0007	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0008	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0009	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471