JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOP1A_chr6_83062671_83173471	0/0	c0010	7398	1	0	1	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0011	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0012	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0013	7388	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0014	7398	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0015	7398	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0016	7398	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	c0017	7398	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1B_chr21_36151824_36299274	0/0	c0001	6897	70	12	11	30	2	15	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0002	6897	58	16	14	19	1	8	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0003	6897	35	16	11	4	2	2	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/1	c0004	6897	27	1	4	10	2	9	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0005	6897	13	13	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0006	6897	13	8	3	2	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0007	6897	9	0	6	0	3	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0008	6897	9	0	0	9	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0009	6897	5	4	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0010	6897	3	0	3	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0011	6897	3	0	2	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0012	6897	3	1	1	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0013	6897	3	0	0	3	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0014	6897	3	2	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0015	6897	3	1	2	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0016	6897	2	0	2	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0017	6897	2	2	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0018	6897	2	0	0	0	2	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0019	6897	2	2	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0020	6897	2	0	1	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0021	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0022	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0023	6897	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0024	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0025	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0026	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0027	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0028	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0029	6897	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0030	6897	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0031	6897	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0032	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0033	6897	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0034	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0035	6897	1	0	0	0	1	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0036	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0037	6897	1	0	0	0	1	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0038	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	1/0	c0039	6897	1	0	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0040	6897	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0041	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0042	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274