JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DOP1B_chr21_36151824_36299274	0/0	c0043	6897	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0044	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	c0045	6897	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOT1L_chr19_2158933_2237578	1/0	c0001	4614	178	41	31	73	7	25	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0002	4614	64	5	18	27	7	7	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0003	4614	44	13	7	22	0	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/1	c0004	4614	37	13	7	9	3	4	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0005	4614	8	0	0	8	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0006	4614	7	4	1	2	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0007	4614	4	0	0	4	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0008	4614	3	3	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0009	4614	3	0	2	0	1	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0010	4614	2	0	0	2	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0011	4614	2	0	0	2	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0012	4614	2	0	0	0	0	2	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0013	4614	2	2	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0014	4614	2	2	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0015	4614	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0016	4614	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0017	4614	1	0	0	0	0	1	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0018	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0019	4614	1	0	0	0	0	1	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0020	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0021	4614	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0022	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0023	4614	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0024	4614	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0025	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0026	4614	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0027	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0028	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0029	4614	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0030	4614	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0031	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0032	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0033	4614	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	c0034	4614	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DPAGT1_chr11_119091510_119106853	1/1	c0001	1227	212	59	47	72	10	22	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	c0002	1227	208	29	25	123	5	26	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	c0003	1227	1	0	0	1	0	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	c0004	1227	1	0	0	0	1	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPCD_chr10_101583321_101614662	1/1	c0001	612	273	61	42	120	9	39	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	c0002	612	35	6	13	5	7	4	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	c0003	612	31	14	5	10	0	2	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	c0004	612	1	0	0	1	0	0	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	c0005	612	1	0	0	0	0	1	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	c0006	612	1	1	0	0	0	0	copy fasta	DPCD	chr10	101583321	101614662
DPEP1_chr16_89608642_89643433	1/1	c0001	1236	167	60	35	41	11	18	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0002	1236	69	7	20	33	1	8	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0003	1236	3	3	0	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433