JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPEP1_chr16_89608642_89643433	0/0	c0004	1236	3	3	0	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0005	1236	2	0	2	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0006	1236	1	0	0	1	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0007	1236	1	0	1	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0008	1236	1	0	0	0	0	1	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0009	1236	1	0	0	0	0	1	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0010	1236	1	1	0	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	c0011	1236	1	0	0	1	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP2NB_chr16_68008436_68020911	1/1	c0001	372	359	92	72	137	16	40	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	c0002	372	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	c0003	372	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	c0004	372	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2_chr16_67982394_68004484	1/1	c0001	1461	300	60	61	129	15	33	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0002	1461	25	22	1	0	0	2	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0003	1461	14	9	5	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0004	1461	10	0	3	7	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0005	1461	1	0	0	0	1	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0006	1461	1	1	0	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0007	1461	1	0	0	0	0	1	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0008	1461	1	0	1	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0009	1461	1	0	0	1	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0010	1461	1	0	1	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	c0011	1461	1	0	0	1	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP3_chr16_67970663_67985499	1/1	c0001	1467	292	61	70	106	18	35	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0002	1467	15	13	1	0	0	1	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0003	1467	10	9	1	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0004	1467	5	5	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0005	1467	4	4	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0006	1467	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0008	1467	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0009	1467	1	1	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0010	1467	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPF1_chr19_38206006_38229222	1/1	c0001	1164	399	95	78	172	11	41	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0002	1164	22	0	5	10	4	3	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0003	1164	9	0	2	4	1	2	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0004	1164	1	0	0	1	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0005	1164	1	0	1	0	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0006	1164	1	0	0	1	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF2_chr11_65328852_65359262	0/0	c0001	1176	344	82	64	144	18	36	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	c0002	1176	5	3	0	2	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	c0003	1176	3	3	0	0	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	c0004	1176	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF2_chr11_65328852_65359262	0/0	c0005	1176	1	0	0	1	0	0	copy fasta	DPF2	chr11	65328852	65359262
DPF3_chr14_72604034_72899101	1/1	c0001	1137	174	58	31	51	5	27	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0002	1137	34	6	9	11	1	7	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0003	1137	11	11	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0004	1137	5	5	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101