JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPF3_chr14_72604034_72899101	0/0	c0005	1137	3	3	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0006	1137	2	0	2	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0007	1137	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0008	1137	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0009	1137	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0010	1137	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	c0011	1137	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPH1_chr17_2025153_2048898	0/0	c0001	1317	281	78	23	146	8	26	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	1/0	c0002	1317	46	12	10	10	2	11	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0003	1317	40	0	28	7	1	4	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0004	1317	14	0	5	0	3	6	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/1	c0005	1317	7	0	5	0	0	1	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0006	1317	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0007	1317	1	0	1	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0008	1317	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	c0009	1317	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH2_chr1_43965010_43978369	1/1	c0001	1470	373	81	68	174	12	36	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0002	1470	4	0	0	4	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0003	1470	3	0	0	3	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0004	1470	1	0	0	1	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0005	1470	1	1	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0006	1470	1	1	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	c0007	1470	1	1	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH3_chr3_16252061_16269943	1/1	c0001	249	244	63	40	112	8	19	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	c0002	249	211	33	43	106	2	27	copy fasta	DPH3	chr3	16252061	16269943
DPH3_chr3_16252061_16269943	0/0	c0003	249	1	0	1	0	0	0	copy fasta	DPH3	chr3	16252061	16269943
DPH5_chr1_100984623_101030784	1/1	c0001	858	271	78	43	98	14	36	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	c0002	858	5	4	1	0	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	c0003	858	4	0	0	4	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	c0004	858	2	2	0	0	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH6_chr15_35365880_35551165	1/1	c0001	804	207	74	30	77	8	16	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	c0002	804	10	8	2	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	c0003	804	7	0	2	5	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	c0004	804	2	2	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	c0005	804	1	1	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	c0006	804	1	1	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH7_chr9_137549444_137583925	1/1	c0001	1359	318	75	74	108	16	43	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0002	1359	9	9	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0003	1359	2	2	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0004	1359	2	0	0	2	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0005	1359	2	0	0	2	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0006	1359	2	2	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0008	1359	1	0	0	0	0	1	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPM1_chr20_50929870_50963532	1/1	c0001	783	377	88	70	165	14	38	copy fasta	DPM1	chr20	50929870	50963532
DPM1_chr20_50929870_50963532	0/0	c0002	783	2	2	0	0	0	0	copy fasta	DPM1	chr20	50929870	50963532
DPM1_chr20_50929870_50963532	0/0	c0003	783	1	0	0	1	0	0	copy fasta	DPM1	chr20	50929870	50963532