JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPM2_chr9_127930099_127942854	0/1	c0001	255	237	55	54	93	10	24	copy fasta	DPM2	chr9	127930099	127942854
DPM2_chr9_127930099_127942854	1/0	c0002	255	115	32	7	59	2	14	copy fasta	DPM2	chr9	127930099	127942854
DPM2_chr9_127930099_127942854	0/0	c0003	255	34	0	2	30	0	2	copy fasta	DPM2	chr9	127930099	127942854
DPM2_chr9_127930099_127942854	0/0	c0004	255	4	3	1	0	0	0	copy fasta	DPM2	chr9	127930099	127942854
DPM3_chr1_155134891_155145531	1/1	c0001	279	345	91	60	128	18	46	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	c0002	279	2	0	0	0	0	2	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	c0003	266	1	0	0	1	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	c0004	279	1	0	0	1	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	c0005	279	1	1	0	0	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPP10_chr2_114437641_115850780	0/0	c0001	2391	18	9	2	3	1	3	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0002	2391	17	9	3	3	1	1	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0003	2391	7	7	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0004	2391	6	5	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0005	2391	4	3	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0006	2391	2	2	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0007	2391	1	0	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	c0008	2391	1	1	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP3_chr11_66475434_66514657	0/1	c0001	2214	106	36	19	35	7	8	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	1/0	c0002	2214	95	8	10	56	4	16	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0003	2214	91	10	16	55	3	7	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0004	2214	11	0	10	0	0	1	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0005	2214	7	7	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0006	2214	5	5	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0007	2214	5	5	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0008	2214	4	0	2	2	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0009	2214	4	3	1	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0010	2214	3	2	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0011	2214	2	1	1	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0012	2214	2	1	1	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0013	2214	2	0	0	0	0	2	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0014	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0015	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0016	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0017	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0018	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0019	2214	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0020	2214	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0021	2214	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0022	2214	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0023	2214	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	c0024	2214	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP4_chr2_161987245_162079215	1/1	c0001	2301	225	67	36	78	14	28	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0002	2301	33	11	5	3	2	12	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0003	2301	10	8	2	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0004	2301	7	0	0	7	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0005	2301	7	0	0	7	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0006	2301	2	0	2	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0007	2301	2	2	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0008	2301	2	0	0	2	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0009	2301	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215