JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPP4_chr2_161987245_162079215	0/0	c0010	2301	1	0	1	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0011	2301	1	0	0	1	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	c0012	2301	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP6_chr7_154047398_154899285	0/0	c0001	2598	3	0	1	2	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0002	2598	3	0	0	3	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0003	2598	2	2	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0004	2598	2	2	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0005	2598	2	0	2	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0006	2598	2	1	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0007	2598	2	0	1	0	0	1	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0008	2598	2	2	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0009	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0010	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0011	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0012	2598	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0013	2598	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0014	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0015	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0016	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0017	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0018	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0019	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0020	2598	1	0	0	0	0	1	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0021	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0022	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0023	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0024	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0025	2598	1	0	0	1	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0026	2598	1	1	0	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0027	2598	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	c0028	2598	1	0	1	0	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP7_chr9_137105546_137119733	0/0	c0001	1479	216	52	27	107	5	25	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	1/0	c0002	1479	86	1	21	55	2	6	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/1	c0003	1479	53	9	21	0	9	13	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0004	1479	32	0	8	22	1	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0005	1480	13	12	1	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0006	1479	12	12	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0007	1479	12	7	2	2	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0008	1479	3	1	2	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0009	1479	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0010	1479	2	0	1	0	1	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0011	1479	2	0	1	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0012	1479	2	1	1	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0013	1479	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0014	1479	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0015	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0016	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0017	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0018	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0019	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733