JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPP7_chr9_137105546_137119733	0/0	c0020	1479	1	0	0	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0021	1480	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0022	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0023	1480	1	1	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0024	1479	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0025	1479	1	1	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0026	1479	1	1	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0027	1479	1	0	1	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0028	1479	1	0	0	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	c0029	1479	1	0	0	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP8_chr15_65437467_65522689	1/1	c0001	2649	273	51	52	118	14	36	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0002	2649	25	10	5	6	0	4	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0003	2649	24	22	2	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0004	2649	6	0	0	0	0	6	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0005	2649	2	2	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0006	2649	1	0	1	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0007	2649	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0008	2649	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0009	2649	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0010	2649	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	c0011	2649	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP9_chr19_4670227_4728842	1/1	c0001	2679	261	60	68	77	13	41	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0002	2679	19	18	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0003	2679	7	6	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0004	2679	6	0	0	6	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0005	2679	3	3	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0006	2679	2	0	2	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0007	2679	2	0	0	2	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0008	2679	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0009	2679	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0010	2679	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0011	2679	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0012	2679	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0013	2679	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0014	2679	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0015	2679	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0016	2679	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0017	2679	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0018	2679	1	1	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0019	2679	1	0	0	0	1	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0020	2679	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	c0021	2679	1	0	0	0	0	1	copy fasta	DPP9	chr19	4670227	4728842
DPPA2_chr3_109288788_109321517	1/1	c0001	897	406	86	80	175	18	45	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0002	897	10	10	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0003	897	1	1	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0004	897	1	0	1	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0005	897	1	0	0	1	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0006	897	1	0	1	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0007	897	1	1	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	c0008	897	1	0	0	0	0	1	copy fasta	DPPA2	chr3	109288788	109321517