JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPPA3_chr12_7706433_7722559	1/1	c0001	480	383	81	64	185	13	38	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	c0002	480	80	16	14	35	5	10	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	c0003	480	2	0	2	0	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	c0004	480	1	1	0	0	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA4_chr3_109321144_109342546	0/0	c0001	915	204	16	34	123	9	22	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	1/1	c0002	915	86	34	20	22	3	5	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0003	915	82	22	16	38	0	6	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0004	915	19	17	1	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0005	915	12	1	5	1	2	3	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0006	915	4	3	1	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0007	915	3	3	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0008	915	2	0	0	2	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0009	915	1	1	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0010	915	1	1	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0011	915	1	0	1	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	c0012	915	1	0	0	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA5_chr6_73348063_73359276	1/0	c0001	351	399	87	78	181	14	38	copy fasta	DPPA5	chr6	73348063	73359276
DPPA5_chr6_73348063_73359276	0/0	c0002	351	26	11	1	12	2	0	copy fasta	DPPA5	chr6	73348063	73359276
DPPA5_chr6_73348063_73359276	0/1	c0003	351	2	0	1	0	0	0	copy fasta	DPPA5	chr6	73348063	73359276
DPPA5_chr6_73348063_73359276	0/0	c0004	351	1	0	0	1	0	0	copy fasta	DPPA5	chr6	73348063	73359276
DPRX_chr19_53626999_53642014	1/1	c0001	576	470	94	86	220	18	50	copy fasta	DPRX	chr19	53626999	53642014
DPRX_chr19_53626999_53642014	0/0	c0002	576	7	6	1	0	0	0	copy fasta	DPRX	chr19	53626999	53642014
DPRX_chr19_53626999_53642014	0/0	c0003	576	1	0	1	0	0	0	copy fasta	DPRX	chr19	53626999	53642014
DPT_chr1_168690468_168734206	1/0	c0001	606	276	53	40	142	12	28	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/1	c0002	606	109	22	26	34	6	20	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0003	606	14	14	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0004	606	10	0	10	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0005	606	8	0	0	8	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0006	606	7	1	5	0	0	1	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0007	606	3	3	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0008	606	2	2	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0009	606	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0010	606	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0011	606	1	0	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0012	606	1	0	0	1	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0013	606	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0014	606	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0015	606	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0016	606	1	0	0	0	0	1	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	c0017	606	1	0	0	1	0	0	copy fasta	DPT	chr1	168690468	168734206
DPY19L1_chr7_34923881_35042485	1/1	c0001	2247	261	66	45	126	1	21	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0002	2247	53	10	14	21	1	7	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0003	2247	3	3	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0004	2226	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0005	2247	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0006	2247	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0007	2247	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0008	2247	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0009	2247	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0010	2247	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485