Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRA3_chr4_22382376_22521066	0/0	c0017	3966	2	2	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0018	3966	2	0	0	2	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0019	3966	2	0	0	0	1	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0020	3966	2	0	1	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0021	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0022	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0023	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0024	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0025	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0026	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0027	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0028	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0029	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0030	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0031	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0032	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0033	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0034	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/1	c0035	3966	1	0	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0036	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0037	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0038	3966	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0039	3966	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0040	3966	1	0	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	c0041	3966	1	0	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRB1_chr8_142444649_142550007	0/1	c0001	4755	165	24	62	54	10	14	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0002	4755	33	0	3	23	0	7	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	1/0	c0003	4755	18	12	1	1	1	2	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0004	4755	16	6	0	9	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0005	4755	8	0	0	8	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0006	4755	7	6	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0007	4755	7	7	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0008	4755	7	4	0	2	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0009	4755	6	6	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0010	4755	3	3	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0011	4755	3	2	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0012	4755	2	0	0	2	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0013	4755	2	2	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0014	4755	2	1	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0015	4755	2	2	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0016	4755	2	0	0	2	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0017	4755	2	2	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0018	4755	2	2	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0019	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0020	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0021	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0022	4742	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0023	4755	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0024	4755	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0025	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007