JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPY19L1_chr7_34923881_35042485	0/0	c0011	2247	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0012	2247	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0013	2247	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	c0014	2247	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L2_chr12_63553913_63673493	0/0	c0001	2277	104	12	11	72	0	9	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/1	c0002	2277	94	12	19	54	3	5	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	1/0	c0003	2277	60	13	19	14	3	10	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0004	2277	34	16	9	0	5	4	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0005	2277	28	3	2	19	0	4	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0006	2277	18	10	5	0	1	2	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0007	2277	8	8	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0008	2277	6	5	1	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0009	2277	2	2	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0010	2277	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0012	2277	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0013	2277	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0014	2277	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0015	2277	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0016	2277	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	c0017	2277	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L3_chr19_32400770_32490890	0/1	c0001	2151	215	41	28	111	9	25	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	1/0	c0002	2151	95	12	24	46	4	8	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0003	2151	65	24	12	17	1	11	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0004	2151	5	5	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0005	2151	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0006	2151	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0007	2151	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	c0008	2151	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L4_chr8_94714900_94798836	1/1	c0001	2172	262	74	50	104	6	26	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0002	2172	9	9	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0003	2172	5	5	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0004	2172	3	0	0	3	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0005	2172	2	2	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0007	2172	1	0	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0008	2172	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0009	2172	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0011	2172	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	c0013	2172	1	0	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY30_chr2_32018905_32044805	1/1	c0001	300	382	94	68	169	13	36	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	c0002	300	1	0	0	1	0	0	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	c0003	300	1	0	0	0	1	0	copy fasta	DPY30	chr2	32018905	32044805
DPYD_chr1_97072743_97926034	1/1	c0001	3078	15	7	2	2	1	1	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0002	3078	10	10	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0003	3078	6	0	1	2	0	3	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0004	3078	5	2	3	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0005	3078	3	3	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034