JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DQX1_chr2_74513131_74531231	0/0	c0006	2154	2	1	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0007	2154	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0008	2154	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0009	2154	1	0	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0010	2154	1	0	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0011	2154	1	1	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0012	2154	1	0	0	0	0	1	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0013	2154	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DR1_chr1_93340907_93374493	1/1	c0001	531	331	88	65	137	16	23	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	c0002	531	27	3	7	11	0	6	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	c0003	531	1	1	0	0	0	0	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	c0004	531	1	0	0	0	0	1	copy fasta	DR1	chr1	93340907	93374493
DRAM1_chr12_101872580_101928612	1/1	c0001	717	394	98	65	187	10	32	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	c0002	717	1	0	1	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	c0003	717	1	0	0	1	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM2_chr1_111112163_111145093	1/1	c0001	801	436	94	81	204	10	45	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	c0002	801	2	2	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	c0003	801	1	0	0	0	0	1	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	c0004	801	1	0	1	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAP1_chr11_65914426_65926563	1/1	c0001	618	395	94	72	179	12	36	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0002	618	2	0	0	0	0	2	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0003	618	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0004	618	1	0	0	1	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0005	618	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0006	618	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	c0007	618	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAXIN_chr1_11686710_11730857	1/1	c0001	1050	252	66	45	94	12	33	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0002	1050	83	9	12	52	4	6	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0003	1050	22	4	6	6	2	4	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0004	1050	10	0	5	5	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0005	1050	7	0	0	7	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0006	1050	7	7	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0007	1050	3	0	0	3	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0008	1050	3	0	3	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0009	1050	2	2	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0010	1050	2	0	0	1	0	1	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0011	1050	2	0	0	0	0	2	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0012	1050	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0013	1050	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0014	1050	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0015	1050	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	c0016	1050	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRC1_chr2_26396920_26461711	0/1	c0001	2223	111	32	29	27	6	16	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0002	2223	100	2	16	80	0	2	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0003	2223	39	0	7	20	2	10	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0004	2223	29	20	7	2	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0005	2223	19	10	2	6	0	1	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0006	2223	14	0	4	10	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0007	2223	13	10	0	3	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0008	2223	10	0	0	10	0	0	copy fasta	DRC1	chr2	26396920	26461711