JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DRC1_chr2_26396920_26461711	0/0	c0009	2223	9	0	0	7	0	2	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0010	2223	4	3	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0011	2223	4	4	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0012	2223	4	4	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0013	2223	4	0	2	0	2	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0014	2223	3	1	2	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0015	2223	3	2	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0016	2223	3	3	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0017	2223	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0018	2223	1	0	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0019	2223	1	0	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0020	2223	1	0	0	0	0	1	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0021	2223	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0022	2223	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0023	2223	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0024	2223	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0025	2223	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0026	2223	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0027	2208	1	0	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	1/0	c0028	2223	1	0	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0029	2223	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0030	2223	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	c0031	2223	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC3_chr17_17967862_18021889	0/1	c0001	1572	167	23	29	100	3	11	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	1/0	c0002	1572	119	46	32	30	5	5	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0003	1572	11	7	4	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0004	1572	6	0	3	0	2	1	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0005	1572	4	4	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0006	1572	4	4	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0007	1572	3	0	3	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0012	1572	1	0	0	0	0	1	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0014	1572	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0015	1572	1	0	1	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0016	1572	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	c0017	1572	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC7_chr16_57689806_57736805	1/1	c0001	2625	161	10	33	88	5	23	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0002	2625	50	11	7	18	6	8	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0003	2625	44	0	10	33	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0004	2625	21	3	0	8	2	8	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0005	2625	21	18	2	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0006	2625	11	4	4	0	1	2	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0007	2625	9	3	5	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0008	2625	8	8	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0009	2625	7	4	2	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0010	2625	6	6	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805